For example, if you have files, 1,2,3,...10,11,12, it will rename the files into 01, 02, 03, etc.
#!/bin/bash
echo $1;
mkdir $1/output
for each in `ls $1`
do
filename=$(echo $each | cut -f1 -d '.' | tr -d '[[:digit:]]')
extension=$(echo $each | cut -f2 -d'.')
number=$(echo $each | tr -cd '[[:digit:]]')
echo $number;
cp $1/$each $1/output/$filename`printf "%03d" $((10#$number))`.$extension
done
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